But I just don't understand.
From the definitions (simplified, as I as I understand them)
500 hPa geopotential height = the height at which the atmospheric pressure is 500 hPa
1000 to 500 hPa thickness = the height difference between the 1000 hPa level and the 500 hPa level
Since sea level pressure is about 1000 hPa, I would think that the height at which atmospheric pressure is 500 hPa should be about the same as the height between the 1000 hPa level and the 500 hPa level.
For example the pressure at RDU is about 1015 hPa. Let's say my 1000 hPa height is 11 dm, and my 500 hPa height is say 560 dm. So my 1000 - 500 thickness is 560-11 or 549 dm. So yeah, the 1000 - 500 thickness is a little less than the 500 hPa height, because 100 hPa is a little up in the air from the surface. But why don't 1000 - 500 thickness basically follow 500 hPa heights, just with a little negative offset?