The stable layer might be shallower some places due to where standing gravity waves set up. The supercell itself was cyclonic, so the anticyclonic tornado was probably displaced from the main mesocyclone. I think the reason elevated supercells don't usually produce tornadoes is the fact that the low pressure in the center lifts up the stable layer similar to how a hurricane storm surge lifts the water surface. This makes the inflow above the stable layer more sloped as opposed to the abrupt rising motion you get under a surface based mesocyclone. But if you have an anticyclonic circulation it's probably not directly in the center of the main mesocyclone. I recall the El Reno tornado of May 31, 2013 produced at least one anticyclonic tornado displaced quite a ways from the main tornado.